Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00198.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3997
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:1336 original size:14 final size:14

Alignment explanation


    Indices: 1317--1343  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       1307 ATGTTGGTTT

                          
       1317 TATATTTATATATA
          1 TATATTTATATATA

                         
       1331 TATATTTATATAT
          1 TATATTTATATAT

       1344 TTCATTACAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59


Consensus pattern (14 bp):   
TATATTTATATATA

Found at i:1386 original size:8 final size:9

Alignment explanation


    Indices: 1362--1387  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       1352 AACATGGTAT

                     
       1362 ATATTTTTA
          1 ATATTTTTA

                     
       1371 ATATTTTTA
          1 ATATTTTTA

                    
       1380 ATATTTTT
          1 ATATTTTT

       1388 GTATTATGCT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69


Consensus pattern (9 bp):   
ATATTTTTA
Done.