Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00211.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4315
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31


Found at i:1612 original size:16 final size:16

Alignment explanation


    Indices: 1591--1621  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1581 ATTAGGTTTA

                            
       1591 GGTAAGATCAATCCTT
          1 GGTAAGATCAATCCTT

                           
       1607 GGTAAGATCAATCCT
          1 GGTAAGATCAATCCT

       1622 AATAACATGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29


Consensus pattern (16 bp):   
GGTAAGATCAATCCTT
Done.