Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00215.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 530

Length: 884
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41


Found at i:194 original size:3 final size:3

Alignment explanation


    Indices: 186--238  Score: 106
    Period size: 3  Copynumber: 17.7  Consensus size: 3

        176 CTTTCTTTCT

                                                                           
        186 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

                  
        234 TTC TT
          1 TTC TT

        239 GCCTTTTCCA


Statistics
Matches: 50,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   50  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTC

Done.