Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00219.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3345
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33


Found at i:1345 original size:144 final size:144

Alignment explanation


    Indices: 714--1309  Score: 953
    Period size: 144  Copynumber: 4.1  Consensus size: 144

        704 CTCAAGGAAC

                                       *                                   * 
        714 ATGCTTGTTGGTCCAATCCCATCTTCTATCAACAACTTAACCAATCTTGCATCGTTGGTTCTTAA
          1 ATGCTTGTTGGTCCAATCCCATCTTCTGTCAACAACTTAACCAATCTTGCATCGTTGGTTCTTTA

                                        *                                    
        779 T-GACAACCAACTTAATGGATCCATTCCGCAAGAAATTGGGAGACTGACAAATTTGATTACATTG
         66 TGGA-AACCAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTGACAAATTTGATTACATTG

              *            
        843 GAGCTATCTTCTAAT
        130 GATCTATCTTCTAAT

                                             *                   **          
        858 ATGCTTGTTGGTCCAATCCCATCTTCTGTCAACCACTTAACCAATCTTGCATCACTGGTTCTTTA
          1 ATGCTTGTTGGTCCAATCCCATCTTCTGTCAACAACTTAACCAATCTTGCATCGTTGGTTCTTTA

                                                                             
        923 TGGAAACCAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTGACAAATTTGATTACATTGG
         66 TGGAAACCAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTGACAAATTTGATTACATTGG

                          
        988 ATCTATCTTCTAAT
        131 ATCTATCTTCTAAT

                                             *                   **          
       1002 ATGCTTGTTGGTCCAATCCCATCTTCTGTCAACCACTTAACCAATCTTGCATCACTGGTTCTTTA
          1 ATGCTTGTTGGTCCAATCCCATCTTCTGTCAACAACTTAACCAATCTTGCATCGTTGGTTCTTTA

                                                                             
       1067 TGGAAACCAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTGACAAATTTGATTACATTGG
         66 TGGAAACCAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTGACAAATTTGATTACATTGG

                          
       1132 ATCTATCTTCTAAT
        131 ATCTATCTTCTAAT

                                                                             
       1146 ATGCTTGTTGGTCCAATCCCATCTTCTGTCAACAACTTAACCAATCTTGCATCGTTGGTTCTTTA
          1 ATGCTTGTTGGTCCAATCCCATCTTCTGTCAACAACTTAACCAATCTTGCATCGTTGGTTCTTTA

                        *              *  *           *  *  *      *       **
       1211 TGGAAACCAACTCAATGGATCCATTCCGCATGAAATTGGGAGGCTAACGAATTTGGTTACATTAC
         66 TGGAAACCAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTGACAAATTTGATTACATTGG

                   ** *   
       1276 ATCTATCCGCCAAT
        131 ATCTATCTTCTAAT

                           *     
       1290 ATGCTT-TTGGGTCCCATCCC
          1 ATGCTTGTT-GGTCCAATCCC

       1310 TTCCTCTTTG


Statistics
Matches: 427,  Mismatches: 23, Indels: 4
        0.94            0.05        0.01

Matches are distributed among these distances:
 143    2  0.00
 144  423  0.99
 145    2  0.00

ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33


Consensus pattern (144 bp):   
ATGCTTGTTGGTCCAATCCCATCTTCTGTCAACAACTTAACCAATCTTGCATCGTTGGTTCTTTA
TGGAAACCAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTGACAAATTTGATTACATTGG
ATCTATCTTCTAAT

Done.