Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00226.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 300

Length: 500
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:204 original size:15 final size:15

Alignment explanation


    Indices: 184--251  Score: 109
    Period size: 15  Copynumber: 4.5  Consensus size: 15

        174 CAATGGCGAA

                       *   
        184 AAATCAAAAGATGAC
          1 AAATCAAAAGACGAC

                           
        199 AAATCAAAAGACGAC
          1 AAATCAAAAGACGAC

                           
        214 AAATCAAAAGACGAC
          1 AAATCAAAAGACGAC

                       *   
        229 AAATCAAAAGATGAC
          1 AAATCAAAAGACGAC

              *     
        244 AAGTCAAA
          1 AAATCAAA

        252 GCATGAAGTC


Statistics
Matches: 50,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   50  1.00

ACGTcount: A:0.60, C:0.16, G:0.13, T:0.10


Consensus pattern (15 bp):   
AAATCAAAAGACGAC

Done.