Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00227.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 835

Length: 1392
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28


Found at i:111 original size:15 final size:15

Alignment explanation


    Indices: 91--164  Score: 121
    Period size: 15  Copynumber: 4.9  Consensus size: 15

         81 CAATGGCGAA

                           
         91 AAATCAAAAGATGAC
          1 AAATCAAAAGATGAC

                           
        106 AAATCAAAAGATGAC
          1 AAATCAAAAGATGAC

                       *   
        121 AAATCAAAAGACGAC
          1 AAATCAAAAGATGAC

                           
        136 AAATCAAAAGATGAC
          1 AAATCAAAAGATGAC

              *      *    
        151 AAGTCAAAACATGA
          1 AAATCAAAAGATGA

        165 AGTCGGAATA


Statistics
Matches: 55,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   55  1.00

ACGTcount: A:0.59, C:0.15, G:0.14, T:0.12


Consensus pattern (15 bp):   
AAATCAAAAGATGAC

Done.