Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00249.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4272
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34


Found at i:594 original size:12 final size:12

Alignment explanation


    Indices: 579--635  Score: 51
    Period size: 12  Copynumber: 4.8  Consensus size: 12

        569 TCCCTCCTCT

                    *   
        579 CTTTCCTCTACC
          1 CTTTCCTCCACC

                  *  * *
        591 CTTTCCACCGCT
          1 CTTTCCTCCACC

                     *  
        603 CTTTCCTCCGCC
          1 CTTTCCTCCACC

                    *   
        615 CTTTCCTCTACC
          1 CTTTCCTCCACC

             *       
        627 CCTTCCTCC
          1 CTTTCCTCC

        636 CTCCGTTCAC


Statistics
Matches: 35,  Mismatches: 10, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  12   35  1.00

ACGTcount: A:0.05, C:0.54, G:0.04, T:0.37


Consensus pattern (12 bp):   
CTTTCCTCCACC

Found at i:3425 original size:25 final size:25

Alignment explanation


    Indices: 3391--3438  Score: 96
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       3381 TGTCAGCTAT

                                     
       3391 AGTTTAGGTTAGTAGCTTATGAACA
          1 AGTTTAGGTTAGTAGCTTATGAACA

                                   
       3416 AGTTTAGGTTAGTAGCTTATGAA
          1 AGTTTAGGTTAGTAGCTTATGAA

       3439 GATGATATGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38


Consensus pattern (25 bp):   
AGTTTAGGTTAGTAGCTTATGAACA
Done.