Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00254.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 889

Length: 1482
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:293 original size:6 final size:6

Alignment explanation


    Indices: 282--306  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        272 GATTGAGGGT

                                         
        282 AAAGGA AAAGGA AAAGGA AAAGGA A
          1 AAAGGA AAAGGA AAAGGA AAAGGA A

        307 TTCTGCAACA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00


Consensus pattern (6 bp):   
AAAGGA

Done.