Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00280.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3831
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36


Found at i:1827 original size:13 final size:13

Alignment explanation


    Indices: 1809--1837  Score: 58
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       1799 CATCTAAACT

                         
       1809 TCTTGTATGTTTG
          1 TCTTGTATGTTTG

                         
       1822 TCTTGTATGTTTG
          1 TCTTGTATGTTTG

               
       1835 TCT
          1 TCT

       1838 GAGTTCTAAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.07, C:0.10, G:0.21, T:0.62


Consensus pattern (13 bp):   
TCTTGTATGTTTG
Done.