Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00285.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 962

Length: 1604
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35


Found at i:206 original size:26 final size:26

Alignment explanation


    Indices: 177--232  Score: 71
    Period size: 25  Copynumber: 2.2  Consensus size: 26

        167 GGCTTTTTTC

                           *          *
        177 TTTCTAAA-ACTACAGCCTTTGGTAAG
          1 TTTCTAAACACT-CAACCTTTGGTAAA

                                      
        203 TTTC-AAACACTCAACCTTTGGTAAA
          1 TTTCTAAACACTCAACCTTTGGTAAA

                 
        228 TTTCT
          1 TTTCT

        233 TCCCTTTATT


Statistics
Matches: 26,  Mismatches: 2, Indels: 4
        0.81            0.06        0.12

Matches are distributed among these distances:
  25   19  0.73
  26    7  0.27

ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38


Consensus pattern (26 bp):   
TTTCTAAACACTCAACCTTTGGTAAA
Done.