Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00295.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2436
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26


Found at i:492 original size:3 final size:3

Alignment explanation


    Indices: 484--511  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

        474 AGAAAACGAT

                                                 
        484 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G

        512 GACCAAGCTG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (3 bp):   
GAA

Done.