Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00296.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3242
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36


Found at i:1047 original size:29 final size:29

Alignment explanation


    Indices: 1001--1074  Score: 80
    Period size: 31  Copynumber: 2.5  Consensus size: 29

        991 GATCAAATAA

                               **         
       1001 AAAATT-ATGTATTAAATTTTACA-AAATC
          1 AAAATTCATGTA-TAAATTACACATAAATC

                                           
       1029 AAAATTCATGTATAGAATTACACATTAAATC
          1 AAAATTCATGTATA-AATTACACA-TAAATC

                     *     
       1060 AAAATTCATATATAA
          1 AAAATTCATGTATAA

       1075 TTTTGAAATT


Statistics
Matches: 39,  Mismatches: 3, Indels: 6
        0.81            0.06        0.12

Matches are distributed among these distances:
  28    8  0.21
  29   12  0.31
  30    1  0.03
  31   18  0.46

ACGTcount: A:0.51, C:0.09, G:0.04, T:0.35


Consensus pattern (29 bp):   
AAAATTCATGTATAAATTACACATAAATC
Done.