Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00303.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 826

Length: 1377
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26


Found at i:1064 original size:6 final size:6

Alignment explanation


    Indices: 1055--1080  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       1045 AAATGGAAAT

                                          
       1055 GGTCGA GGTCGA GGTCGA GGTCGA GG
          1 GGTCGA GGTCGA GGTCGA GGTCGA GG

       1081 GGCGCCTGGC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.15, C:0.15, G:0.54, T:0.15


Consensus pattern (6 bp):   
GGTCGA

Done.