Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00304.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3137
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33


Found at i:2608 original size:27 final size:27

Alignment explanation


    Indices: 2568--2648  Score: 103
    Period size: 27  Copynumber: 3.0  Consensus size: 27

       2558 AGGAAGCGTC

                                        
       2568 CTGGTGGCTATGCCACAATTATCTGATT
          1 CTGGTGGCTATGCCACAATTATCTG-TT

                   * *                  
       2596 -TGGTGGTTCTGCCACATATT-TCTGTT
          1 CTGGTGGCTATGCCACA-ATTATCTGTT

                     *                 
       2622 CTGGTGGCTGTGCCACAATTATCTGTT
          1 CTGGTGGCTATGCCACAATTATCTGTT

       2649 TCTGATGACT


Statistics
Matches: 46,  Mismatches: 4, Indels: 7
        0.81            0.07        0.12

Matches are distributed among these distances:
  26    5  0.11
  27   38  0.83
  28    3  0.07

ACGTcount: A:0.16, C:0.21, G:0.23, T:0.40


Consensus pattern (27 bp):   
CTGGTGGCTATGCCACAATTATCTGTT
Done.