Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00310.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4061
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32


Found at i:474 original size:39 final size:39

Alignment explanation


    Indices: 431--509  Score: 149
    Period size: 39  Copynumber: 2.0  Consensus size: 39

        421 ATTGAATGTG

                        *                          
        431 AAGCACGTAGGTTTTGGGAGTTATTTCTTCTTATTCGTT
          1 AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT

                                                   
        470 AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT
          1 AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT

             
        509 A
          1 A

        510 TTATTGTTGG


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  39   39  1.00

ACGTcount: A:0.19, C:0.13, G:0.24, T:0.44


Consensus pattern (39 bp):   
AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT
Done.