Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00311.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 484

Length: 807
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30


Found at i:10 original size:2 final size:2

Alignment explanation


    Indices: 4--32  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

          1 GGG

                                                       
          4 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G

         33 CATTTCGATC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00


Consensus pattern (2 bp):   
GA

Done.