Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00330.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 432

Length: 720
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29


Found at i:61 original size:6 final size:6

Alignment explanation


    Indices: 46--88  Score: 68
    Period size: 6  Copynumber: 7.2  Consensus size: 6

         36 GCCCAACTCT

                 *                   *                        
         46 CCGCCG CCGCCA CCGCCA CCGCAA CCGCCA CCGCCA CCGCCA C
          1 CCGCCA CCGCCA CCGCCA CCGCCA CCGCCA CCGCCA CCGCCA C

         89 AGATCCAAGC


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.16, C:0.65, G:0.19, T:0.00


Consensus pattern (6 bp):   
CCGCCA

Done.