Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02077.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2929
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32


Found at i:17 original size:2 final size:2

Alignment explanation


    Indices: 11--44  Score: 59
    Period size: 2  Copynumber: 17.0  Consensus size: 2

          1 CTCCTCTCAC

                                       *                      
         11 CT CT CT CT CT CT CT CT CT GT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

         45 TGGAGTTCAT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50


Consensus pattern (2 bp):   
CT

Done.