Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g00361.N18
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2206
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Found at i:2039 original size:561 final size:561
Alignment explanation
Indices: 977--2098 Score: 2172
Period size: 561 Copynumber: 2.0 Consensus size: 561
967 CTGGCACCAG
977 ACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAT
1 ACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAT
*
1042 AGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCT
66 AGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAAGATTGGGTAATTTGCGCGCCT
1107 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTC
131 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTC
1172 CGTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG
196 CGTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG
*
1237 AATGATGCGTCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACG
261 AATGATGCATCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACG
1302 GGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA
326 GGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA
1367 CGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACTGA
391 CGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACTGA
1432 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATC
456 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATC
1497 TTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTA
521 TTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTA
1538 ACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAT
1 ACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAT
1603 AGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAAGATTGGGTAATTTGCGCGCCT
66 AGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAAGATTGGGTAATTTGCGCGCCT
1668 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTC
131 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTC
* *
1733 TGTCACTCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG
196 CGTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG
* *
1798 AATGATGCATCGCCGGCACAAAGGCCGTGCGATCTGTCGAGTTATCATGAATCATCAGAGCAATG
261 AATGATGCATCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACG
*
1863 GGCAAAGCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA
326 GGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA
*
1928 CGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTAAATACCATCAAACAAACTATAACTGA
391 CGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACTGA
1993 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATC
456 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATC
2058 TTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTA
521 TTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTA
2099 GCATTCCTCC
Statistics
Matches: 553, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
561 553 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (561 bp):
ACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAT
AGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAAGATTGGGTAATTTGCGCGCCT
GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTC
CGTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG
AATGATGCATCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACG
GGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA
CGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACTGA
TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATC
TTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTA
Done.