Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g00361.N30
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2299
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Found at i:2132 original size:561 final size:561
Alignment explanation
Indices: 1070--2191 Score: 2172
Period size: 561 Copynumber: 2.0 Consensus size: 561
1060 CTGGCACCAG
1070 ACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAT
1 ACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAT
*
1135 AGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCT
66 AGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAAGATTGGGTAATTTGCGCGCCT
1200 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTC
131 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTC
1265 CGTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG
196 CGTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG
*
1330 AATGATGCGTCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACG
261 AATGATGCATCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACG
1395 GGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA
326 GGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA
1460 CGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACTGA
391 CGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACTGA
1525 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATC
456 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATC
1590 TTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTA
521 TTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTA
1631 ACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAT
1 ACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAT
1696 AGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAAGATTGGGTAATTTGCGCGCCT
66 AGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAAGATTGGGTAATTTGCGCGCCT
1761 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTC
131 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTC
* *
1826 TGTCACTCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG
196 CGTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG
* *
1891 AATGATGCATCGCCGGCACAAAGGCCGTGCGATCTGTCGAGTTATCATGAATCATCAGAGCAATG
261 AATGATGCATCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACG
*
1956 GGCAAAGCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA
326 GGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA
*
2021 CGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTAAATACCATCAAACAAACTATAACTGA
391 CGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACTGA
2086 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATC
456 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATC
2151 TTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTA
521 TTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTA
2192 GCATTCCTCC
Statistics
Matches: 553, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
561 553 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (561 bp):
ACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAT
AGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAAGATTGGGTAATTTGCGCGCCT
GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTC
CGTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG
AATGATGCATCGCCGGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACG
GGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA
CGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACTGA
TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATC
TTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTA
Done.