Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02098.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1038
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.24


Found at i:197 original size:60 final size:60

Alignment explanation


    Indices: 120--238  Score: 152
    Period size: 60  Copynumber: 2.0  Consensus size: 60

        110 AAAACCGGAG

                 *   *        *                                           
        120 CCGGATCCAGAACCGGAGGCAGAGCCAAAGTTAGAGGGA-A-AACCGAAGCCAGATCCAGAA
          1 CCGGAACCAAAACCGGAGACAGAGCCAAAGTT--AGGGACAGAACCGAAGCCAGATCCAGAA

                                       *                    * *        
        180 CCGGAACCAAAACCGGAGACAGAGCCAGAGTTAGGGACAGAACCGAAGTCGGATCCAGA
          1 CCGGAACCAAAACCGGAGACAGAGCCAAAGTTAGGGACAGAACCGAAGCCAGATCCAGA

        239 GTTAGAGCCA


Statistics
Matches: 51,  Mismatches: 6, Indels: 4
        0.84            0.10        0.07

Matches are distributed among these distances:
  58    5  0.10
  59    1  0.02
  60   45  0.88

ACGTcount: A:0.38, C:0.25, G:0.30, T:0.07


Consensus pattern (60 bp):   
CCGGAACCAAAACCGGAGACAGAGCCAAAGTTAGGGACAGAACCGAAGCCAGATCCAGAA
Done.