Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g00357.N268
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2896
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Found at i:1137 original size:561 final size:561
Alignment explanation
Indices: 75--1196 Score: 2172
Period size: 561 Copynumber: 2.0 Consensus size: 561
65 GGAGGAATGC
75 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
1 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
140 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
66 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
205 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
131 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
270 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
196 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
*
335 CTCGACAGATCGCACGGCCTTTGTGCCGGCGATGCATCATTCAAATTTCTGCCCTATCAACTTTC
261 CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
400 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
326 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
*
465 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCTTG
391 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
530 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
456 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
595 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
521 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
636 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
1 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
701 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
66 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
*
766 TTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
131 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
* *
831 GGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTTTGCCCGTTGCTCTGATGATTCATGATAA
196 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
*
896 CTCGACGGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
261 CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
* *
961 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAG
326 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
1026 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
391 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
1091 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
456 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
1156 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
521 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
1197 CTGGTGCCAG
Statistics
Matches: 553, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
561 553 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (561 bp):
TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
Done.