Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00357.N339

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2143
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26


Found at i:642 original size:323 final size:323

Alignment explanation


    Indices: 54--700  Score: 1258
    Period size: 323  Copynumber: 2.0  Consensus size: 323

         44 GGAGGAATGC

                                                                             
         54 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
          1 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA

                                                                             
        119 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
         66 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA

                                                                             
        184 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
        131 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA

                                                                             
        249 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
        196 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA

                                                                           
        314 CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTT
        261 CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTT

                                                                             
        377 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
          1 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA

                                                                             
        442 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
         66 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA

               *                                                             
        507 TTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
        131 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA

                                            *         *                      
        572 GGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTTTGCCCGTTGCTCTGATGATTCATGATAA
        196 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA

                  *                                                        
        637 CTCGACGGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTT
        261 CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTT

             
        700 T
          1 T

        701 CGATGGTAGG


Statistics
Matches: 320,  Mismatches: 4, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 323  320  1.00

ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30


Consensus pattern (323 bp):   
TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTT
Done.