Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g00357.N358
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2423
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Found at i:1116 original size:561 final size:561
Alignment explanation
Indices: 54--1175 Score: 2172
Period size: 561 Copynumber: 2.0 Consensus size: 561
44 GGAGGAATGC
54 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
1 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
119 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
66 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
184 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
131 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
249 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
196 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
*
314 CTCGACAGATCGCACGGCCTTTGTGCCGGCGATGCATCATTCAAATTTCTGCCCTATCAACTTTC
261 CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
379 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
326 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
*
444 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCTTG
391 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
509 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
456 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
574 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
521 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
615 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
1 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
680 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
66 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
*
745 TTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
131 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
* *
810 GGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTTTGCCCGTTGCTCTGATGATTCATGATAA
196 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
*
875 CTCGACGGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
261 CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
* *
940 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAG
326 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
1005 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
391 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
1070 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
456 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
1135 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
521 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
1176 CTGGTGCCAG
Statistics
Matches: 553, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
561 553 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (561 bp):
TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
Done.