Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02109.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 236

Length: 394
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Found at i:284 original size:6 final size:7

Alignment explanation


    Indices: 268--294  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

        258 GGCTCAGCTG

                   
        268 TTTTCCT
          1 TTTTCCT

                   
        275 TTTTCCT
          1 TTTTCCT

                   
        282 TTTTCCT
          1 TTTTCCT

                  
        289 TTTTCC
          1 TTTTCC

        295 AATGAACAAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70


Consensus pattern (7 bp):   
TTTTCCT

Done.