Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g00357.N470
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2411
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Found at i:1107 original size:561 final size:561
Alignment explanation
Indices: 45--1166 Score: 2172
Period size: 561 Copynumber: 2.0 Consensus size: 561
35 GGAGGAATGC
45 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
1 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
110 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
66 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
175 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
131 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
240 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
196 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
*
305 CTCGACAGATCGCACGGCCTTTGTGCCGGCGATGCATCATTCAAATTTCTGCCCTATCAACTTTC
261 CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
370 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
326 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
*
435 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCTTG
391 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
500 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
456 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
565 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
521 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
606 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
1 TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
671 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
66 TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
*
736 TTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
131 TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
* *
801 GGGATGCATTTATTAGATAAAAGGTCGACGCGGGCTTTGCCCGTTGCTCTGATGATTCATGATAA
196 GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
*
866 CTCGACGGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
261 CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
* *
931 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAG
326 GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
996 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
391 AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
1061 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
456 ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
1126 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
521 ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
1167 CTGGTGCCAG
Statistics
Matches: 553, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
561 553 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (561 bp):
TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA
TGAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTA
TTTACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAA
GGGATGCATTTATTAGATAAAAGGTCGACGCGAGCTTTGCCCATTGCTCTGATGATTCATGATAA
CTCGACAGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTC
GATGGTAGGATAGTGGCCTACTATGGTGGTGACGAGTGACAGAGAATTAGGGTTCGATTCCGGAG
AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTG
ACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTATGAGTCTGGTAATTGGAATGAGT
ACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGT
Done.