Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02115.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4617
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29


Found at i:76 original size:12 final size:12

Alignment explanation


    Indices: 59--93  Score: 52
    Period size: 12  Copynumber: 2.8  Consensus size: 12

         49 TTTAACTGTC

                        
         59 TCTTCTTTTTCT
          1 TCTTCTTTTTCT

                        
         71 TCTTCTTTTTCT
          1 TCTTCTTTTTCT

             *         
         83 TTTTGCTTTTT
          1 TCTT-CTTTTT

         94 TTCCTCCTTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  12   15  0.71
  13    6  0.29

ACGTcount: A:0.00, C:0.20, G:0.03, T:0.77


Consensus pattern (12 bp):   
TCTTCTTTTTCT
Done.