Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02121.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1212
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33


Found at i:449 original size:24 final size:24

Alignment explanation


    Indices: 417--463  Score: 85
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        407 GGAACAAGTA

                             *      
        417 ATTCCTTTAAGATTAATGCATCGC
          1 ATTCCTTTAAGATTAATCCATCGC

                                   
        441 ATTCCTTTAAGATTAATCCATCG
          1 ATTCCTTTAAGATTAATCCATCG

        464 TTTCTTCTCT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38


Consensus pattern (24 bp):   
ATTCCTTTAAGATTAATCCATCGC
Done.