Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02124.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3213
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36


Found at i:2689 original size:16 final size:17

Alignment explanation


    Indices: 2665--2697  Score: 50
    Period size: 16  Copynumber: 2.0  Consensus size: 17

       2655 TTAAAAATTA

                             
       2665 AAATATTATAT-TATTG
          1 AAATATTATATATATTG

                *            
       2681 AAATGTTATATATATTG
          1 AAATATTATATATATTG

       2698 TGTTATTGAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16   10  0.67
  17    5  0.33

ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48


Consensus pattern (17 bp):   
AAATATTATATATATTG
Done.