Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02132.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1920
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26


Found at i:254 original size:3 final size:3

Alignment explanation


    Indices: 246--289  Score: 88
    Period size: 3  Copynumber: 14.7  Consensus size: 3

        236 GGAATTTGAA

                                                                      
        246 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
          1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA

        290 AGATGACGAG


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00


Consensus pattern (3 bp):   
GAG

Found at i:1274 original size:26 final size:27

Alignment explanation


    Indices: 1220--1276  Score: 71
    Period size: 26  Copynumber: 2.1  Consensus size: 27

       1210 GCCTGCTGGA

                             *  *      
       1220 GCTGGGTTCAACCATGGTGTTGCTCCT
          1 GCTGGGTTCAACCATGGAGTGGCTCCT

                         *          *  
       1247 GCTGGGTT-AACCCTGGAGTGGCTGCT
          1 GCTGGGTTCAACCATGGAGTGGCTCCT

                
       1273 GCTG
          1 GCTG

       1277 CTGCACCGGG


Statistics
Matches: 26,  Mismatches: 4, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  26   18  0.69
  27    8  0.31

ACGTcount: A:0.11, C:0.25, G:0.35, T:0.30


Consensus pattern (27 bp):   
GCTGGGTTCAACCATGGAGTGGCTCCT
Done.