Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00248.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4815
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36


Found at i:1837 original size:20 final size:18

Alignment explanation


    Indices: 1812--1870  Score: 55
    Period size: 20  Copynumber: 2.9  Consensus size: 18

       1802 CGTGTGAATG

                                
       1812 TTGACCAGTCAAAAACTGGA
          1 TTGACCAGT-AAAAAC-GGA

                  *             
       1832 TTGACCGGTATGAAAACGGA
          1 TTGACCAGTA--AAAACGGA

                               
       1852 TTGAACCAGTTAAAAACGG
          1 TTG-ACCAG-TAAAAACGG

       1871 TTTTTTATTC


Statistics
Matches: 33,  Mismatches: 2, Indels: 8
        0.77            0.05        0.19

Matches are distributed among these distances:
  19    1  0.03
  20   21  0.64
  21    9  0.27
  22    2  0.06

ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20


Consensus pattern (18 bp):   
TTGACCAGTAAAAACGGA
Done.