Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02135.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2354
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27


Found at i:30 original size:2 final size:2

Alignment explanation


    Indices: 23--52  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

         13 TAAACAATAA

                                 *                      
         23 CT CT CT CT CT CT CT TT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

         53 ACACTAGTAG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53


Consensus pattern (2 bp):   
CT

Found at i:109 original size:2 final size:2

Alignment explanation


    Indices: 102--130  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

         92 GGGATAATAT

                                                       
        102 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

        131 GAAATTCTTC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Done.