Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02146.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4058
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32


Found at i:3951 original size:12 final size:12

Alignment explanation


    Indices: 3934--3966  Score: 66
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       3924 TTCTCTGTAA

                        
       3934 AATAGTAAAAAT
          1 AATAGTAAAAAT

                        
       3946 AATAGTAAAAAT
          1 AATAGTAAAAAT

                     
       3958 AATAGTAAA
          1 AATAGTAAA

       3967 GGGGAAGTAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24


Consensus pattern (12 bp):   
AATAGTAAAAAT
Done.