Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00368.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2560
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32


Found at i:2362 original size:65 final size:66

Alignment explanation


    Indices: 2280--2418  Score: 237
    Period size: 65  Copynumber: 2.1  Consensus size: 66

       2270 AAGCCAAAAC

                                                                             
       2280 ATGTCTGATCAAGAATCACAATCAGTTCTTGCCAGAGATGCAGAAATCGAATGATGTAGGAATAG
          1 ATGTCTGATCAAGAATCACAATCAGTTCTTGCCAGAGATGCAGAAATCGAATGATGTAGGAATAG

             
       2345 G
         66 G

                                                    *            *       *   
       2346 ATGTC-GATCAAGAATCACAATCAGTTCTTGCCAGAGATGTAGAAATCGAATGGTGTAGGACTAG
          1 ATGTCTGATCAAGAATCACAATCAGTTCTTGCCAGAGATGCAGAAATCGAATGATGTAGGAATAG

             
       2410 G
         66 G

                     
       2411 ATGT-TGAT
          1 ATGTCTGAT

       2419 ATTTGTCCAT


Statistics
Matches: 69,  Mismatches: 3, Indels: 3
        0.92            0.04        0.04

Matches are distributed among these distances:
  65   64  0.93
  66    5  0.07

ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26


Consensus pattern (66 bp):   
ATGTCTGATCAAGAATCACAATCAGTTCTTGCCAGAGATGCAGAAATCGAATGATGTAGGAATAG
G
Done.