Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00380.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1911
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31


Found at i:1640 original size:7 final size:7

Alignment explanation


    Indices: 1630--1655  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

       1620 ACATGGGGAA

                   
       1630 TGGGATG
          1 TGGGATG

                   
       1637 TGGGATG
          1 TGGGATG

                   
       1644 TGGGATG
          1 TGGGATG

                 
       1651 TGGGA
          1 TGGGA

       1656 AGACGTGATC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.15, C:0.00, G:0.58, T:0.27


Consensus pattern (7 bp):   
TGGGATG
Done.