Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00380.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2673
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32


Found at i:2402 original size:7 final size:7

Alignment explanation


    Indices: 2392--2417  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

       2382 ACATGGGGAA

                   
       2392 TGGGATG
          1 TGGGATG

                   
       2399 TGGGATG
          1 TGGGATG

                   
       2406 TGGGATG
          1 TGGGATG

                 
       2413 TGGGA
          1 TGGGA

       2418 AGACGTGATC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.15, C:0.00, G:0.58, T:0.27


Consensus pattern (7 bp):   
TGGGATG
Done.