Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00382.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1749
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29


Found at i:1412 original size:87 final size:89

Alignment explanation


    Indices: 1274--1447  Score: 262
    Period size: 87  Copynumber: 2.0  Consensus size: 89

       1264 TAATGAGTTA

                        *       *     *                         *            
       1274 TCTTATTAAGTGGGAGGTTTCAAACGTAGAAAAAGAATTGCAGCAGTGCATCTTTTTCTGTTATT
          1 TCTTATTAAGTGAGAGGTTTAAAACGCAGAAAAAGAATTGCAGCAGTGCATCATTTTCTGTTATT

                                    
       1339 CGATCAAC-AAAGACAATGAGAAC
         66 CGATCAACAAAAGACAATGAGAAC

                                    *           *                            
       1362 TCTTATTAAGTGAGAGG-TTAAAATGCAGAAAAAGATTTGCAGCAGTGCATCATTTTCTGTTATT
          1 TCTTATTAAGTGAGAGGTTTAAAACGCAGAAAAAGAATTGCAGCAGTGCATCATTTTCTGTTATT

                 *        *       
       1426 CGATCGACAAAAGATAATGAGA
         66 CGATCAACAAAAGACAATGAGA

       1448 TGATGCAGGG


Statistics
Matches: 77,  Mismatches: 8, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
  87   49  0.64
  88   28  0.36

ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30


Consensus pattern (89 bp):   
TCTTATTAAGTGAGAGGTTTAAAACGCAGAAAAAGAATTGCAGCAGTGCATCATTTTCTGTTATT
CGATCAACAAAAGACAATGAGAAC

Done.