Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00392.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4469
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31


Found at i:2914 original size:69 final size:69

Alignment explanation


    Indices: 2751--2964  Score: 392
    Period size: 69  Copynumber: 3.1  Consensus size: 69

       2741 AAAAGTTTGA

                                                                             
       2751 TGATGGCACTTTGTGATTGTGCTACACCATCACTTGAAAATTAAAAAATATATATTATATAAATT
          1 TGATGGCACTTTGTGATTGTGCTACACCATCACTTGAAAATTAAAAAA-A-ATATTATATAAATT

                  
       2816 TTCAGG
         64 TTCAGG

                                                                             
       2822 TGATGGCACTTTGTGATTGTGCTACACCATCACTTGAAAATTAAAAAAAATATTATATAAATTTT
          1 TGATGGCACTTTGTGATTGTGCTACACCATCACTTGAAAATTAAAAAAAATATTATATAAATTTT

                
       2887 CAGG
         66 CAGG

                              *                               *              
       2891 TGATGGCACTTTGTGATTATGCTACACCATCACTTGAAAATTAAAAAAAAAATTATATAAATTTT
          1 TGATGGCACTTTGTGATTGTGCTACACCATCACTTGAAAATTAAAAAAAATATTATATAAATTTT

                
       2956 CAGG
         66 CAGG

                 
       2960 TGATG
          1 TGATG

       2965 ACGTGGTACA


Statistics
Matches: 141,  Mismatches: 2, Indels: 2
        0.97            0.01        0.01

Matches are distributed among these distances:
  69   92  0.65
  70    1  0.01
  71   48  0.34

ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35


Consensus pattern (69 bp):   
TGATGGCACTTTGTGATTGTGCTACACCATCACTTGAAAATTAAAAAAAATATTATATAAATTTT
CAGG
Done.