Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00392.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2887
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27


Found at i:1659 original size:17 final size:17

Alignment explanation


    Indices: 1637--1669  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1627 TCTGAGGTAT

                              
       1637 GTTTTCT-TTCTGACTTG
          1 GTTTTCTGTT-TGACTTG

                            
       1654 GTTTTCTGTTTGACTT
          1 GTTTTCTGTTTGACTT

       1670 TTTTGTTTGC


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  17   13  0.87
  18    2  0.13

ACGTcount: A:0.06, C:0.15, G:0.18, T:0.61


Consensus pattern (17 bp):   
GTTTTCTGTTTGACTTG
Done.