Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00427.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 582

Length: 971
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28


Found at i:647 original size:18 final size:18

Alignment explanation


    Indices: 626--677  Score: 86
    Period size: 18  Copynumber: 2.9  Consensus size: 18

        616 AAAATGTGGG

                             *
        626 AAATGATGTTCACATTTT
          1 AAATGATGTTCACATTTC

                        *     
        644 AAATGATGTTCAGATTTC
          1 AAATGATGTTCACATTTC

                            
        662 AAATGATGTTCACATT
          1 AAATGATGTTCACATT

        678 GATAGAAACG


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   31  1.00

ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40


Consensus pattern (18 bp):   
AAATGATGTTCACATTTC
Done.