Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00431.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2942
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37


Found at i:2269 original size:15 final size:15

Alignment explanation


    Indices: 2249--2277  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       2239 TTACAAGTGA

                           
       2249 TTGTTGTTAAGATAC
          1 TTGTTGTTAAGATAC

                          
       2264 TTGTTGTTAAGATA
          1 TTGTTGTTAAGATA

       2278 TTGAACCCAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48


Consensus pattern (15 bp):   
TTGTTGTTAAGATAC
Done.