Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00432.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 661

Length: 1103
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34


Found at i:1055 original size:40 final size:40

Alignment explanation


    Indices: 994--1071  Score: 138
    Period size: 40  Copynumber: 1.9  Consensus size: 40

        984 TCCCCTGAAT

                            *                       
        994 GTTCCTCTTTCCACACTTGAAAGTCTGCATGTTCTATCAG
          1 GTTCCTCTTTCCACACCTGAAAGTCTGCATGTTCTATCAG

                       *                          
       1034 GTTCCTCTTTCTACACCTGAAAGTCTGCATGTTCTATC
          1 GTTCCTCTTTCCACACCTGAAAGTCTGCATGTTCTATC

       1072 TCTGCTAAAG


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  40   36  1.00

ACGTcount: A:0.19, C:0.28, G:0.14, T:0.38


Consensus pattern (40 bp):   
GTTCCTCTTTCCACACCTGAAAGTCTGCATGTTCTATCAG
Done.