Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00435.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2952
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31


Found at i:1993 original size:8 final size:8

Alignment explanation


    Indices: 1980--2008  Score: 58
    Period size: 8  Copynumber: 3.6  Consensus size: 8

       1970 AACAATGTTG

                    
       1980 TTTTTTAT
          1 TTTTTTAT

                    
       1988 TTTTTTAT
          1 TTTTTTAT

                    
       1996 TTTTTTAT
          1 TTTTTTAT

                 
       2004 TTTTT
          1 TTTTT

       2009 GCAGATCTTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   21  1.00

ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90


Consensus pattern (8 bp):   
TTTTTTAT
Done.