Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00436.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1796
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32


Found at i:248 original size:12 final size:12

Alignment explanation


    Indices: 231--258  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

        221 ATTATTCTTT

                        
        231 AGAGTAAAAGGG
          1 AGAGTAAAAGGG

                        
        243 AGAGTAAAAGGG
          1 AGAGTAAAAGGG

                
        255 AGAG
          1 AGAG

        259 ATGTATATGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.50, C:0.00, G:0.43, T:0.07


Consensus pattern (12 bp):   
AGAGTAAAAGGG
Done.