Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00017.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3720
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33


Found at i:3240 original size:34 final size:34

Alignment explanation


    Indices: 3197--3263  Score: 134
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       3187 TGAGAAAGAC

                                              
       3197 AAACTATCAAAGTATCAAGTATAAGATCTCGATA
          1 AAACTATCAAAGTATCAAGTATAAGATCTCGATA

                                             
       3231 AAACTATCAAAGTATCAAGTATAAGATCTCGAT
          1 AAACTATCAAAGTATCAAGTATAAGATCTCGAT

       3264 TATCATCCAT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   33  1.00

ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27


Consensus pattern (34 bp):   
AAACTATCAAAGTATCAAGTATAAGATCTCGATA
Done.