Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00437.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3697
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:3307 original size:12 final size:12

Alignment explanation


    Indices: 3290--3314  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       3280 GTCGTAAACA

                        
       3290 GCCTACCACACG
          1 GCCTACCACACG

                        
       3302 GCCTACCACACG
          1 GCCTACCACACG

             
       3314 G
          1 G

       3315 TCTGTGTCGT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.48, G:0.20, T:0.08


Consensus pattern (12 bp):   
GCCTACCACACG
Done.