Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00440.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2061
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28


Found at i:862 original size:9 final size:9

Alignment explanation


    Indices: 848--876  Score: 51
    Period size: 9  Copynumber: 3.3  Consensus size: 9

        838 GTAAGCAAGG

                     
        848 AGAAAAAGA
          1 AGAAAAAGA

                     
        857 AGAAAAAGA
          1 AGAAAAAGA

                     
        866 AG-AAAAGA
          1 AGAAAAAGA

               
        874 AGA
          1 AGA

        877 GGTCTTTTTG


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
   8    8  0.42
   9   11  0.58

ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00


Consensus pattern (9 bp):   
AGAAAAAGA
Done.