Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00465.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1257
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29


Found at i:986 original size:18 final size:18

Alignment explanation


    Indices: 963--999  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        953 CTCCGTCTCA

                              
        963 GAAACCAGAAAGCGAGAC
          1 GAAACCAGAAAGCGAGAC

                              
        981 GAAACCAGAAAGCGAGAC
          1 GAAACCAGAAAGCGAGAC

             
        999 G
          1 G

       1000 GGAAATCCGT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.49, C:0.22, G:0.30, T:0.00


Consensus pattern (18 bp):   
GAAACCAGAAAGCGAGAC
Done.