Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00471.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 674

Length: 1124
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29


Found at i:161 original size:21 final size:21

Alignment explanation


    Indices: 122--162  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        112 GTTTAGGGGC

                          *      
        122 AGAGGTGATGGAGGGAGAGGG
          1 AGAGGTGATGGAGGAAGAGGG

                   *   *        
        143 AGAGGTGGTGGTGGAAGAGG
          1 AGAGGTGATGGAGGAAGAGG

        163 TGGCGATAGA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.27, C:0.00, G:0.61, T:0.12


Consensus pattern (21 bp):   
AGAGGTGATGGAGGAAGAGGG
Done.