Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00479.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3900
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29


Found at i:2229 original size:13 final size:13

Alignment explanation


    Indices: 2211--2240  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       2201 TGAATGAAAA

                     *   
       2211 TTGCATTGCGGTT
          1 TTGCATTGCAGTT

                         
       2224 TTGCATTGCAGTT
          1 TTGCATTGCAGTT

                
       2237 TTGC
          1 TTGC

       2241 TTTTCAGTCT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.10, C:0.17, G:0.27, T:0.47


Consensus pattern (13 bp):   
TTGCATTGCAGTT
Done.